homologene

• Table of Contents
• About
  • Selected Papers
• How to Access
  • Download Overview
  • File Listing
  • Issue Reporting
• How to Cite

"HomoloGene is a system that automatically detects homologs, including paralogs and orthologs, among the genes of 21 completely sequenced eukaryotic genomes. HomoloGene reports include homology and phenotype information drawn from Online Mendelian Inheritance in Man (27), Mouse Genome Informatics (28), Zebrafish Information Network (29), Saccharomyces Genome Database (30) and FlyBase (31). Information about the HomoloGene build procedure is provided at www.ncbi.nlm.nih.gov/HomoloGene/HTML/homologene_buildproc.html."

Excerpted from paper at doi: 10.1093/nar/gkt1146.

Selected Papers

• Location on Cheaha is $SHARE_PROJECT/bioitx/hosted-data/gov/nih/ncbi/ftp/pub/HomoloGene.
• You must be a member of the bioitx Unix group to access these data.
• Data are read-only.

Download Overview

• Version: Apr 15, 2014 build 68
• Download Date: Nov 7, 2017
• Total size: 7.3 GB.

File Listing

See README.

Issue Reporting

Relevant tracked issues on UAB GitLab (blazerid access required):

• https://gitlab.rc.uab.edu/jelaiw/infrastructure-development/issues/33
• https://gitlab.rc.uab.edu/jelaiw/infrastructure-development/issues/34

HomoloGene is an automated system for constructing putative homology groups from the complete gene sets of a wide range of eukaryotic species hosted by the National Center for Biotechnology Information (NCBI) and funded by intramural National Institutes of Health (NIH) funding.

The data used for the analyses described in this manuscript were obtained from the NCBI FTP server on 11/07/2017 and staged to dedicated shared storage at UAB in order to better facilitate researcher access to important public data. These hosted data are documented and supported in part by the Informatics Institute uab-bioitx team and infrastructure.