nih hmp

• Table of Contents
• About
  • Selected Papers
• How to Access
  • Download Overview
  • Issue Reporting
• How to Cite

"The NIH Common Fund Human Microbiome Project (HMP) was established in 2008, with the mission of generating resources that would enable the comprehensive characterization of the human microbiome and analysis of its role in human health and disease."

See https://www.hmpdacc.org/hmp/overview/ for further detail.

Selected Papers

• Location on Cheaha is $SHARE_PROJECT/bioitx/hosted-data/org/ihmpdcc/public-ftp.
• You must be a member of the bioitx Unix group to access these data.
• Data are read-only.
• SHA512 file checksums are available.

Download Overview

• Download Date: Jun 2018
• Total size: 17 TB

Issue Reporting

Relevant tracked issues on UAB GitLab (blazerid access required):

• https://gitlab.rc.uab.edu/jelaiw/infrastructure-development/issues/70
• https://gitlab.rc.uab.edu/jelaiw/infrastructure-development/issues/78

The NIH Common Fund Human Microbiome Project (HMP) was established in 2008, with the mission of generating resources that would enable the comprehensive characterization of the human microbiome and analysis of its role in human health and disease. The HMP is an interdisciplinary effort funded by the NIH Common Fund. HMP1 included four sequencing centers — the Broad Institute, the Baylor College of Medicine, Washington University School of Medicine, and the J. Craig Venter Institute, the Data and Analysis and Coordination Center (DACC), and several investigators.

The data used for the analyses described in this manuscript were obtained from the HMP DCC FTP server in Jun 2018 and staged to dedicated shared storage at UAB in order to better facilitate researcher access to important public data. These hosted data are documented and supported in part by the Informatics Institute uab-bioitx team and infrastructure.