jupyter on cheaha

If you are a newcomer to notebooks, here are some slides that may be helpful.

In collaboration with four science teams, representing Precision Oncology, Glioblastoma, Rheumatoid Arthritis, and Lupus, and in conjunction with UAB's Research Computing, we implemented Jupyter on Cheaha during the U-BRITE pilot.

See the U-BRITE web site at http://ubrite.informatics.uab.edu/ for case studies and more information.

Here are some interesting papers related to using notebooks to facilitate translational research:

• Almugbel et al, "Reproducible Bioconductor workflows using browser-based interactive notebooks and containers", JAMIA, Oct 2017.
  • https://doi.org/10.1093/jamia/ocx120
• Reich et al, "The GenePattern Notebook Environment", Cell Systems, Aug 2017.
  • https://doi.org/10.1016/j.cels.2017.07.003